skope-wasm
Containment estimation using
Skope
.
Usage
Drag & drop target sequences in fasta/fastq format, or a skope query index (.sk)
Drag & drop sample fasta/fastq files, or a directory containing them. Illumina R1/R2 files are paired automatically.
Review options and press run to start
Targets
Click to select fasta/fastq[.gz] files or a query index (.sk), or drop them here
Samples
Click to select fasta/fastq[.gz] files, or drop files or a directory here
Options
K-mer length
S-mer length
Fraction
Complexity
Abundance thresholds
Base limit
Sort
containment
target
input
One target per record
Show TOTAL rows
All k-mers
Discriminatory
Confidence
Interleaved pairs
Optional background sequences: drop fasta/fastq[.gz] files whose k-mers will be ignored
Run
Reset
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Results
Download TSV